"Set Up" on your own guitar is a very personal thing. Those measurements are factory specs and are a good reference to start out with. Set up your string height to what feels best for you. Make them as low as you can (or want) to just above the point where they start to buzz on certain strings. I put mine where they feel comfortable when playing chords or just low enough where I can still bend without them fretting out against the frets. I also tend to try and match the radius on my neck. Start out slow on the string adjustments. Raise them little by little until you get buzzes out especially higher up on your neck (your soloing problem area). Take your high B or E string up above near your highest fret and just bend it a whole tone and listen for buzzes or fret out. If it buzzes or frets out raise your strings on that side of the bridge only. Do this until you can clearly bend all crazy without hearing a buzz. Also check to make sure your bends don't buzz all the way from the 1st fret to the last...bending as you go up. That will be the last check for the higher string side of the bridge. If your neck is straight it shouldn't be that high off the fretboard. Repeat for the lower strings down lower on the neck and only raise on that side of the bridge.
Before you start setting your string heights make sure your neck is STRAIGHT. Tighten or loosen your truss rod as reqd...make a visual inspection down the length of the neck. Again make small adjustments.
Pickups is another personal thing but it also depends on what kind of pickups you have. If you have hot pickups on your guitars I would suggest setting them a little lower than normal (or per the spec) because you don't want your sound getting too distorted and you also don't want the pickup magnets pulling down on your strings giving you false tones and horrible intonation problems. Your guitar will sound differently too when you set the pickup heights to various dimensions from your strings. Ideally, fret down all your strings at the last fret near your neck pickup...and raise or lower the neck pickup so that it's at a decent distance from the strings. Do the same for the bridge pickup. On strat type guitars I set the neck pup height then set the same angle for each remaining pup but each one raised slightly higher than the neck in direct relationship to the distance of the strings down by the bridge so that each pickup is a little higher as you get down to the bridge.
Guitars/Bass - MIM Fender Classic 50s Strat, MIM Fender Standard Strat, Squier Classic Vibe 50s Tele, Gibson Les Paul Studio, Epi '56 Gold Top Les Paul, Martin DSR acoustic, Sigma Martin Auditorium electric/acoustic, Squier Jazz Bass.
Amps/Cabinets/Modelers - Model 2558 50 watt Marshall Silver Anniversary Jubilee combo w/ Celestion Vintage 30s, 4x12 Marshall cabinet w/25 watt Greenback Celestions, Fender Blues Junior w/ a couple of Billm mods, Line 6 POD 2.0, Roland Micro Cube
Pedals/Effects - Cry Baby Classic Wah, Boss TU-2, Boss NS-2, Boss RC-2 Loop Station, Ross Compressor, MXR Micro Amp, Danelectro FAB Echo, Danelectro FAB Chorus, Danelectro Chicken Salad, Marshall Guv'nor Plus, Marshall Echohead, Duhvoodooman's Zonkin' Yellow Screamer, Digitech Digiverb, Digitech Bad Monkey, Dunlop Fuzz Face, Homemade Loop Bypass pedal, Duhvoodooman's Sonic Tonic (Maxon SD-9 clone +), Voodoo Labs Superfuzz